PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093965.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 457aa    MW: 49750.4 Da    PI: 9.2106
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093965.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-05828323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ Cgk F r  nL+ H r H
  XP_010093965.1  8 CEVCGKGFQRDQNLQLHRRGH 28
                    *******************88 PP

2zf-C2H212.90.0003382104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  XP_010093965.1  82 WKCDKCSKRYAVQSDWKAHSKTC 104
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.06E-6528No hitNo description
PROSITE profilePS5015711.51628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.06E-677102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MATNRFLCEV CGKGFQRDQN LQLHRRGHNL PWKLKQRSSK EPKKRVYVCP EKTCVHHHPS  60
RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYK CDCGTLFSRR  120
DSFITHRAFC DALAEETARV KAASDHMSYP MAAGNFSYHF TGASVGANMT QHFPSVFKPI  180
SSPNDVDATI GGGATTRGLS LWMGQGVSQL GQEAAMANNN VTSLQEIHQL GTVSSSGPTI  240
FRTTTDHHHP LSVSCSNPPP PSDYHHHLNW VLGSSTNKLS SNSSTISTTS TTHDQELTTT  300
SLPLRNNNNV KEAASSNNQL VSVPSLYSTQ HTSHHQTPPS SANMSATALL QKAAQIGATS  360
TDSSFLGSFG LKCNNNNSTQ VQEGSNKSCG LYGSNIISTT VESQEGDHLL QIYRPAKRRH  420
VQGSEEGTTG GGAGQTRDFL GVGVQAICHP SSINGWI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093965.10.0Zinc finger protein MAGPIE
SwissprotQ9ZWA61e-132IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLW9QUZ50.0W9QUZ5_9R
STRINGPOPTR_0007s01380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-125C2H2 family protein